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The human gut microbiome as a transporter of antibiotic resistance genes between continents

Johan Bengtsson-Palme ; Martin Angelin ; Mikael Huss ; Sanela Kjellqvist ; Erik Kristiansson (Institutionen för matematiska vetenskaper, matematisk statistik) ; Helena Palmgren ; D. G. Joakim Larsson ; Anders Johansson
Antimicrobial Agents and Chemotherapy (0066-4804). Vol. 59 (2015), 10, p. 6551-6560.
[Artikel, refereegranskad vetenskaplig]

Previous studies of antibiotic resistance dissemination by travel have, by targeting only a select number of cultivable bacterial species, omitted most of the human microbiome. Here, we used explorative shotgun metagenomic sequencing to address the abundance of >300 antibiotic resistance genes in fecal specimens from 35 Swedish students taken before and after exchange programs on the Indian peninsula or in Central Africa. All specimens were additionally cultured for extended-spectrum beta-lactamase (ESBL)-producing enterobacteria, and the isolates obtained were genome sequenced. The overall taxonomic diversity and composition of the gut microbiome remained stable before and after travel, but there was an increasing abundance of Proteobacteria in 25/35 students. The relative abundance of antibiotic resistance genes increased, most prominently for genes encoding resistance to sulfonamide (2.6-fold increase), trimethoprim (7.7-fold), and beta-lactams (2.6-fold). Importantly, the increase observed occurred without any antibiotic intake. Of 18 students visiting the Indian peninsula, 12 acquired ESBL-producing Escherichia coli, while none returning from Africa were positive. Despite deep sequencing efforts, the sensitivity of metagenomics was not sufficient to detect acquisition of the low-abundant genes responsible for the observed ESBL phenotype. In conclusion, metagenomic sequencing of the intestinal microbiome of Swedish students returning from exchange programs in Central Africa or the Indian peninsula showed increased abundance of genes encoding resistance to widely used antibiotics.



Denna post skapades 2015-09-07. Senast ändrad 2016-03-02.
CPL Pubid: 221979

 

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Institutioner (Chalmers)

Institutionen för biomedicin, avdelningen för infektionssjukdomar (GU)
Institutionen för matematiska vetenskaper, matematisk statistik (2005-2016)

Ämnesområden

Bioinformatik (beräkningsbiologi)
Mikrobiologi
Mikrobiologi

Chalmers infrastruktur